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nf-core/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnarna-seq
These pages are for an old version of the pipeline (1.3). The latest stable release is 3.18.0 .
Launch version 1.3 https://github.com/nf-core/rnaseq
  • Introduction
  • Usage
  • Output
  • Results
  • Releases
    • 3.18.0
    • 3.17.0
    • 3.16.1
    • 3.16.0
    • 3.15.1
    • 3.15.0
    • 3.14.0
    • 3.13.2
    • 3.13.1
    • 3.13.0
    • 3.12.0
    • 3.11.2
    • 3.11.1
    • 3.11.0
    • 3.10.1
    • 3.10
    • 3.9
    • 3.8.1
    • 3.8
    • 3.7
    • 3.6
    • 3.5
    • 3.4
    • 3.3
    • 3.2
    • 3.1
    • 3.0
    • 2.0
    • 1.4.2
    • 1.4.1
    • 1.4
    • 1.3
    • 1.2
    • 1.1
    • 1.0
    • dev
Introduction Usage Output Results Releases
  • 3.18.0
  • 3.17.0
  • 3.16.1
  • 3.16.0
  • 3.15.1
  • 3.15.0
  • 3.14.0
  • 3.13.2
  • 3.13.1
  • 3.13.0
  • 3.12.0
  • 3.11.2
  • 3.11.1
  • 3.11.0
  • 3.10.1
  • 3.10
  • 3.9
  • 3.8.1
  • 3.8
  • 3.7
  • 3.6
  • 3.5
  • 3.4
  • 3.3
  • 3.2
  • 3.1
  • 3.0
  • 2.0
  • 1.4.2
  • 1.4.1
  • 1.4
  • 1.3
  • 1.2
  • 1.1
  • 1.0
  • dev

No nextflow_schema.json file found!

It seems like there is no nextflow_schema.json file with parameters defined for this version of the pipeline. Try a newer version.

Making awesome workflows since 2018.

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See the source code for this website on GitHub:
https://github.com/nf-core/website